LIQUIDPlex Universal solid tumor

LIQUIDPlex™ Universal Solid Tumor

Next-generation sequencing panel for the analysis of circulating cell-free DNA using Anchored Multiplex PCR technology.

Overview

The LIQUIDPlex™ Universal Solid Tumor panel is designed for next-generation sequencing (NGS) from circulating cell-free DNA (cfDNA), using the proprietary Anchored Multiplex PCR (AMP™) technology.

AMP™ technology (Anchored Multiplex PCR) is a proprietary targeted enrichment platform for next-generation sequencing (NGS). It is based on the use of unidirectional gene-specific primers (GSPs) and molecular adapters with unique molecular barcodes (MBCs), which are ligated to the genetic material before amplification. This strategy enables the efficient capture and amplification of DNA, RNA or cfDNA fragments, even in the presence of unknown mutations or highly fragmented sequences.

Diagram of Anchored Multiplex PCR AMP technology

The anchored primer architecture supports a flexible design and reduces information loss during library preparation. Combined with Archer™ Analysis software, AMP™ enables systematic error correction, read deduplication and accurate quantification of original molecules, facilitating the detection of point variants, indels, gene fusions and copy number alterations with high sensitivity and specificity.

Recommended tumor types

Breast cancer, lung cancer (NSCLC), colorectal cancer, melanoma and other solid tumors.

Solid tumor types recommended for the LIQUIDPlex panel

Protocol

The panel is designed for use with Illumina® sequencing platforms. The workflow uses Anchored Multiplex PCR (AMP™) technology and consists of multiple steps, including two PCR rounds with gene-specific primers and adapters containing molecular barcodes (MBCs). Library preparation is completed in approximately one and a half days.

The protocol is optimized for circulating cell-free DNA (cfDNA) and supports sample inputs ranging from 5 to 300 ng, obtained from plasma or other compatible sources.

LIQUIDPlex Universal Solid Tumor protocol workflow

Software

Archer™ Analysis is a comprehensive bioinformatics platform developed by IDT for the automated analysis of NGS data generated with panels from the Archer® family, including FUSIONPlex™, VARIANTPlex™ and LIQUIDPlex™. It enables comprehensive molecular analyses from DNA or RNA, tailored to each sample type and clinical or research application. It is compatible with sequencing data from Illumina® platforms—FUSIONPlex™, VARIANTPlex™ and LIQUIDPlex™—and Ion Torrent™ platforms—FUSIONPlex™ only. The platform runs pipelines optimized for each technology. For LIQUIDPlex™, it supports highly sensitive circulating DNA (cfDNA) analysis, including SNVs, indels and molecular barcode-based (MBC) quantification for samples with a low variant allele fraction. Archer™ Analysis provides an intuitive and secure web interface for viewing detected variants, applying customized filters, generating automated reports and performing clinical annotations with tools such as ClinVar, COSMIC and Ensembl, among other reference databases. Designed for regulated environments, it provides complete traceability, reproducible analyses and scalability for laboratories working with advanced genomic profiling in cancer, from research to clinical applications under RUO or CE-IVD labeling, depending on the panel configuration.

Specifications

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Broad detection capability SNVs, indels and CNVs.
LIQUIDPlex panel specifications and detection capabilities

AMP™ technology

Improves sensitivity and accuracy in the detection of genetic alterations.

Optimized for cfDNA

Suitable for low-quality samples.

Starting amount of genetic material

Requires only 5 ng of cfDNA.

Universal compatibility

Compatible with Illumina® sequencers.

Bioinformatics support

Includes the Archer® Analysis platform for data analysis and visualization.

Complete gene list

Complete list of genes included in LIQUIDPlex Universal Solid Tumor
Click the image to enlarge it and view the complete gene list.

Area:

Digestive System, Endocrine System, Liquid Biopsy, Reproductive System, Respiratory System, Solid tumor, Tumor Types

Brand:

Documents:

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